代表性成果:
1.Zhang, X., Lan, L., Yang, Y., Guan, H., Pen, D., Jiang, H., ... & Pan, W. (2026). The pangenome of the rose uncovers massive structure variations for allele mining to empower breeding. Nature Genetics, 58, 1164-1175
2.Shang, L., He, W., Wang, T., Yang, Y., Xu, Q., Zhao, X., ... & Qian, Q. (2023). A complete assembly of the rice Nipponbare reference genome. Molecular Plant, 16(8), 1232-1236.
3.Yang, Y., Zhang, C., Zhu, D., He, H., Wei, Z., Yuan, Q., ... & Shang, L. (2022). Identifying candidate genes and patterns of heat-stress response in rice using a genome-wide association study and transcriptome analyses. The Crop Journal, 10(6), 1633-1643.
4.Xu, D., Yang, Y., Gong, D., Chen, X., Jin, K., Jiang, H., ... & Pan, W. (2023). GFAP: ultra-fast and accurate gene functional annotation software for plants. Plant Physiology, 193(3), 1745-1748.
5.Yang, Y., Yu, J., Qian, Q. & Shang, L. (2022). Enhancement of heat and drought stress tolerance in rice by genetic manipulation: A systematic review. Rice, 15(1), 1-18.
6.Yang, Y., Lenherr, E. D., Gromes, R., Wang, S., Wirtz, M., Hell, R., ... & Rausch, T. (2019). Plant glutathione biosynthesis revisited: redox-mediated activation of glutamylcysteine ligase does not require homo-dimerization. Biochemical Journal, 476(7), 1191-1203.
7.Yang, Y., Du, W., Li, Y., Lei, J. & Pan, W. (2025). Recent advances and challenges in de novo genome assembly. Genomics Communications, 2, e014.
8.Jiang, H., Zhang, X., Leng, L., Gong, D., Zhang, X., Liu, J., ... & Yang, Y. (2023). A chromosome-scale and haplotype-resolved genome assembly of carnation (Dianthus caryophyllus) based on high-fidelity sequencing. Frontiers in Plant Science, 14, 1230836.
9.Yang, J., Zhao, X., Jiang, H., Yang, Y., Hou, Y. & Pan, W. (2023). RAfilter: an algorithm for detecting and filtering false-positive alignments in repetitive genomic regions. Horticulture Research, 10(1), uhac288.
10.Xu, D., Song, Y., Zhao, X., Gong, D., Yang, Y. & Pan, W. (2022). RAviz: a visualization tool for detecting false-positive alignments in repetitive genomic regions. Horticulture Research, 9, uhac161.
11. He, W., He, H., Yuan, Q., Zhang, H. , Li, X., Wang, T., Yang, Y., … & Shang, L. (2024). Widespread inversions shape the genetic and phenotypic diversity in rice. Science Bulletin, 69(5), 593-596.
12. Shang, L., Li, X., He, H., Yuan, Q., Song, Y., Wei, Z., ... Yang, Y., … & Qian, Q. (2022). A super pan-genomic landscape of rice. Cell Research, 32(10), 878-896.